PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Peinf101Scf00665g00009.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Petunioideae; Petunia; Petunia integrifolia
Family TCP
Protein Properties Length: 418aa    MW: 45566.9 Da    PI: 6.8808
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Peinf101Scf00665g00009.1genomeSGNView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP114.81.1e-35361682114
                       TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..........ssssaseceae 76 
                               +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++akpai+el+++                  e+e
  Peinf101Scf00665g00009.1  36 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKPAIDELAELpawkptiganL-------ENE 113
                               79**************************************************************55553332210.......222 PP

                       TCP  77 sssssasnsssg.................kaaksaa.kskksqksaasalnlakes 114
                               + +++++ ++ +                 + +++ + ++ +s+ ++as+l ++ es
  Peinf101Scf00665g00009.1 114 HTQKQQEDNNFNvhqenatslfdnvagpsS-KRAMTsHGANSSGNTASFLPPSLES 168
                               222222211222333444566666666642.2222224444444444444444444 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.8E-3236160IPR005333Transcription factor, TCP
PROSITE profilePS5136934.5433896IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MGDTQYQNQQ TTSRLGLRNT VGEIVEVEGG HIVRSTGRKD RHSKVCTAKG PRDRRVRLSA  60
HTAIQFYDVQ DRLGYDRPSK AVDWLIKKAK PAIDELAELP AWKPTIGANL ENEHTQKQQE  120
DNNFNVHQEN ATSLFDNVAG PSSKRAMTSH GANSSGNTAS FLPPSLESDA IADTIKSFFP  180
MGSSAAANSS AAMQFQGFQD PNFLSRTNSQ SQDLRLSLQF QDPIMLHEQN QQSQHHNNPN  240
NHREQAQVQV QAPGLFAGFD SSGWSMHQQP VELGRVQRVG SWSGNRDNAP GGSGAVTGSG  300
GYLFNSPQAP PQPLLQQLFG GQNQFFSQRG PLQSSNTPSV RAWMDPTSAI SIASADPSHH  360
QHHQAVFPMY PSSIPGYGFA SDVGGFSGFR VPARIQGEEE EHDGISDKPS SASSDSRH
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC2976830.0KC297683.1 Petunia hybrid cultivar W115 TCP trancription factor (TCP5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016581164.10.0PREDICTED: transcription factor TCP4-like
SwissprotQ8LPR51e-104TCP4_ARATH; Transcription factor TCP4
TrEMBLM4PM760.0M4PM76_9SOLA; TCP trancription factor
STRINGPGSC0003DMT4000322680.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32072349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.32e-87TCP family protein